DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and tlx3b

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_739572.1 Gene:tlx3b / 266965 ZFINID:ZDB-GENE-021021-1 Length:300 Species:Danio rerio


Alignment Length:359 Identity:79/359 - (22%)
Similarity:134/359 - (37%) Gaps:116/359 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 SPSPSASGSS-----SLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYP 263
            :||.|.||:|     :.|..::.......|.:...|..:|...::.:::.::|:|          
Zfish     4 APSSSPSGTSQTSQPTQHEPISFGIDQILSGTDQESQQNSTRNSSESSSGSSSAS---------- 58

  Fly   264 YVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVS 328
                     ||...:...||   .|.:.|| |:..::..::.|          |:.::.....::
Zfish    59 ---------GGCYHLGSPTG---ASATPYT-TLTGTFHGIAAP----------YEESSPYGVNLT 100

  Fly   329 AASAGAIGVDS---LGNACTQPASGVMPGAGGAGGAGIADLPRYPWM------------------ 372
            .|..|.|.|.:   |..|...|.:..:||.|...         :|||                  
Zfish   101 LAPGGVIRVPAHRPLAAAVPPPMASAVPGLGSLS---------FPWMESSQRFAKDRFAAALTPF 156

  Fly   373 TLTDWMGSPFERVVCGDFNGPNGCP--RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHAL 435
            |:...:|.|::          |..|  |::.|.:::|.|..||||.||...||....|..:|..|
Zfish   157 TVARRIGHPYQ----------NRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKTL 211

  Fly   436 CLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQ 500
            .:|:.|:|.||||||.|.:             |:..||:|                    .::||
Zfish   212 KMTDAQVKTWFQNRRTKWR-------------RQTAEERE--------------------AERQQ 243

  Fly   501 QQQQQQQQQHQQQQQQPQDHHSIIAHNPGHLHHS 534
            ..:...|.||...|:...|.   :..:|..:|:|
Zfish   244 ANRLMIQLQHDAFQKSLTDS---VPTDPLCIHNS 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 24/51 (47%)
Abdominal-A 456..478 CDD:289192 4/21 (19%)
tlx3bNP_739572.1 Homeobox 177..230 CDD:278475 24/52 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.