DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and gbx2

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_694496.1 Gene:gbx2 / 245948 ZFINID:ZDB-GENE-020509-2 Length:342 Species:Danio rerio


Alignment Length:366 Identity:88/366 - (24%)
Similarity:124/366 - (33%) Gaps:103/366 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 SHGH----------AHQQLLLTPPSAGNSQAGDSSCSPSPSASGSSSL-----HRSLNDNSPGSA 227
            |.||          .::.::|.||.           .|.|.....|:|     |..:    ||..
Zfish    35 SPGHFVYTGYPMFMPYRSVVLPPPP-----------PPPPPTLPQSALPTTHPHHPI----PGLP 84

  Fly   228 SASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRY 292
            |:..| |.|..:|..:...|.......:.|:.:       |..:...| |......:.|||    
Zfish    85 SSFCS-SLAQGMALTSTLMATLPGGFSSSPSQQ-------HQDAARKL-GSQSIHAMFDKS---- 136

  Fly   293 TDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAG------------AIGVDS------ 339
            .|..::.....:.....|.....|:...:...|.|...|..            :..:||      
Zfish   137 QDIRLDGEDGKTFATKDSTSIPSFHDSQSVHTSTVRGHSKDDSKEDDCHRKDESFSMDSDLDYSS 201

  Fly   340 ----LGNACTQP-----ASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNG 395
                .|||..|.     :.|:..|..|..|||                            |..:.
Zfish   202 DDNGPGNAMCQKEDGDGSGGLDDGVHGGNGAG----------------------------NTTST 238

  Fly   396 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAV 460
            ...||.|..:|..|.||||||||...||:...|.:|||||.|:|.|:||||||||.|.|:    |
Zfish   239 GKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR----V 299

  Fly   461 KEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQ 501
            |..|..::.. |.....|....:........::.|.||.:|
Zfish   300 KAGNVNSKTG-EPSRNPKIVVPIPVHVSRFAIRSQHQQLEQ 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 31/51 (61%)
Abdominal-A 456..478 CDD:289192 4/21 (19%)
gbx2NP_694496.1 Homeobox 244..297 CDD:278475 31/52 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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