DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and ceh-13

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_498655.1 Gene:ceh-13 / 176069 WormBaseID:WBGene00000437 Length:202 Species:Caenorhabditis elegans


Alignment Length:237 Identity:69/237 - (29%)
Similarity:94/237 - (39%) Gaps:79/237 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 YVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMS-VPASASAQFAQFYQHATAAASAV 327
            |..:.|::|.                  |..:|.:||..:: .||...|.....|          
 Worm    14 YYQDWPTTHS------------------YYPSVPSSYSPLNHHPADIWAAHPSNY---------- 50

  Fly   328 SAASAGAIGVDSLGNACTQP---ASGVMPGAGGAGGAGIADLP---------RYPWM--TLTDWM 378
                       .:||....|   |||:.|.|..:..:. |:||         .|.||  ..:...
 Worm    51 -----------IMGNGHVSPPATASGLSPPASRSSNSS-AELPTGVTASQHNTYKWMHTKRSQRP 103

  Fly   379 GSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIK 443
            .:|.::|:  |.||.|       |..:|..|..|||||||...|:.|.||.|||..|.|.|.|:|
 Worm   104 AAPKKKVI--DENGTN-------RTNFTTHQLTELEKEFHTAKYVNRTRRTEIASNLKLQEAQVK 159

  Fly   444 IWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKS 485
            |||||||||.||               ||:::...|:.|.:|
 Worm   160 IWFQNRRMKEKK---------------REKEKAFLARNTWES 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 31/51 (61%)
Abdominal-A 456..478 CDD:289192 2/21 (10%)
ceh-13NP_498655.1 Homeobox 118..164 CDD:278475 25/45 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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