DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and lin-39

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001021164.1 Gene:lin-39 / 176068 WormBaseID:WBGene00003024 Length:253 Species:Caenorhabditis elegans


Alignment Length:263 Identity:87/263 - (33%)
Similarity:119/263 - (45%) Gaps:73/263 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 SASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCS 290
            :.|.|.|::.|....|..:::::::|||.:..||.:            |.||:        .|.|
 Worm     2 TTSTSPSSTDAPRATAPESSSSSSSSSSSSSSTSSV------------GASGI--------PSSS 46

  Fly   291 RYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIG---VDSLG--NACTQPA-- 348
            ..:.|:  .|..|:..|:.||.|..:|...:::..|...||:..:|   ...||  :.|..|:  
 Worm    47 ELSSTI--GYDPMTASAALSAHFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPSVT 109

  Fly   349 -----------------SGVMPGAGG--------AGGAGIADLPRYPWMTLTDWMGSPFERVVCG 388
                             .....|..|        :|||      .|||||.           |..
 Worm   110 STHHDWKHLEGDDDDDKDDDKKGISGDDDDMDKNSGGA------VYPWMTR-----------VHS 157

  Fly   389 DFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKL 453
            ...|..|  .:|.|..|||.|.||||||||.:.||||:||||:||:|.|||||:||||||||||.
 Worm   158 TTGGSRG--EKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKH 220

  Fly   454 KKE 456
            |||
 Worm   221 KKE 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 39/51 (76%)
Abdominal-A 456..478 CDD:289192 1/1 (100%)
lin-39NP_001021164.1 Homeobox 169..221 CDD:278475 39/51 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2996
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.760

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