DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and Hoxd10

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_006498852.1 Gene:Hoxd10 / 15430 MGIID:96202 Length:410 Species:Mus musculus


Alignment Length:420 Identity:109/420 - (25%)
Similarity:154/420 - (36%) Gaps:153/420 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 QHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGD--SSCSPSP-SASGSSSL------HRSLN 220
            :|...|.|||      ..|.|:.|...|.|..:...  ..|.||. |...:.||      ..|..
Mouse    16 EHVTCKEAAA------QGHFQISLAWLSCGRQRHPQLHRECFPSDVSLQRTQSLFFKFLPKMSFP 74

  Fly   221 DNSPGS--------ASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSG 277
            ::||.:        .||..|.|..||.|:......:|...::.:.|..:.|.::....:|..: |
Mouse    75 NSSPAANTFLVDSLISACRSDSFYSSSASMYMPPPSADMGTYGMQTCGLLPSLAKREVNHQNM-G 138

  Fly   278 M-------------------------------AGFTG--LEDKSCSRYTD-------TVMNSYQS 302
            |                               ..||.  .|:.:|..|:|       ..:.|||.
Mouse   139 MNVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTANIKEESNCCMYSDKRNKLISAEVPSYQR 203

  Fly   303 MSVPASA---------------SAQFA----QFYQHATAAASAV-------SAA----SAGAIGV 337
            : ||.|.               |..:|    |.|.::...:|.|       .||    ||..:.:
Mouse   204 L-VPESCPVENPEVPVPGYFRLSQTYATGKTQEYNNSPEGSSTVMLQLNPRGAAKPQLSAAQLQM 267

  Fly   338 DSLGNACTQPASGVMP-------GAGGAGG--------AGI-----------------ADLPRYP 370
            :...|   :.|||..|       .....||        |.:                 :|.|...
Mouse   268 EKKMN---ESASGQEPTKVSQVESPEAKGGLPEDRSCLAEVSVSSPEVQEKESKEEIKSDTPTSN 329

  Fly   371 WMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHAL 435
            |:|                  ..:|   |:.|..||:.|||||||||.||.||||.||:||:.::
Mouse   330 WLT------------------AKSG---RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSV 373

  Fly   436 CLTERQIKIWFQNRRMKLKKELR--AVKEI 463
            .||:||:|||||||||||||..|  .::|:
Mouse   374 NLTDRQVKIWFQNRRMKLKKMSRENRIREL 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 36/51 (71%)
Abdominal-A 456..478 CDD:289192 2/10 (20%)
Hoxd10XP_006498852.1 Homeobox 339..393 CDD:365835 37/53 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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