Protein Alignment abd-A and Cdx1

DIOPT Version :9

• Sequence 1: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_034010.3
• Gene: Cdx1 / 12590
• MGIID: 88360
• Length: 268
• Species: Mus musculus
• Alignment Length: 223
• Identity: 71/223 - (31%)
• Similarity: 86/223 - (38%)
• Gaps: 67/223 - (30%)

  Fly   306 PASASAQFAQF--YQHATAAAS------------------------AVSAASAGAIGVDSLGNAC 344
            ||.|..|:..|  |.|...|.:                        ..||||...:......:..
Mouse    35 PAPAPPQYPDFAGYTHVEPAPAPPPTWAAPFPAPKDDWAAAYGPGPTASAASPAPLAFGPPPDFS 99

  Fly   345 TQPA-SGVMPG--AGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRG--RQT 404
            ..|| .|..||  |...|..|....|..|..|..:||    .|.|.....|.:|..|.:.  |..
Mouse   100 PVPAPPGPGPGILAQSLGAPGAPSSPGAPRRTPYEWM----RRSVAAAGGGGSGKTRTKDKYRVV 160

  Fly   405 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARR 469
            ||..|.||||||||::.|:|.||:.|:|..|.|||||:||||||||.|.:|
Mouse   161 YTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERK-------------- 211

  Fly   470 DREEQEKMKAQETMKSAQQNKQVQQQQQ 497
                              .||:.|||||
Mouse   212 ------------------VNKKKQQQQQ 221

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abd-A	NP_732176.1	Homeobox	402..454	CDD:278475	33/51 (65%)
		Abdominal-A	456..478	CDD:289192	0/21 (0%)
Cdx1	NP_034010.3	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..152		29/120 (24%)
		Caudal_act	13..138	CDD:282574	25/106 (24%)
		Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902	157..178		12/20 (60%)
		Homeobox	158..210	CDD:278475	33/51 (65%)
		Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902	196..207		9/10 (90%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	209..268		8/45 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910