DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and LOC116406456

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_002935721.1 Gene:LOC116406456 / 116406456 -ID:- Length:338 Species:Xenopus tropicalis


Alignment Length:360 Identity:94/360 - (26%)
Similarity:136/360 - (37%) Gaps:104/360 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 PQVQQQHLNHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTP 190
            |.:.::.:|||......|........::..|.:.:::|.                 ..|||    
 Frog    54 PSLAKREVNHQNMGMNVHPYIPQVDSWTDPSRSCRIEQP-----------------VTQQL---- 97

  Fly   191 PSAG---NSQAGDSSCSPSP------SASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAA 246
            |:..   |.:...:.|..|.      ||.| .|..|.:.||.|...|            ......
 Frog    98 PTCSFPTNIKEETNCCMYSDKRSKVISAEG-PSYQRLVPDNCPVENS------------EVPVPG 149

  Fly   247 AAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSR-------YTDTVMN----SY 300
            ....|.|:|  |.|...| :|:|.|...|     ...|..::.|:       :.|..||    |.
 Frog   150 YFRLSQSYA--TGKPQEY-NNNPESSSSL-----MLQLNPRTSSKQQIPPQLHMDKKMNENPSSQ 206

  Fly   301 QSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIAD 365
            .|..||:..|......:|...:..:.||.:|......::....                   .:|
 Frog   207 DSGKVPSGESPDPKAAHQEDRSCLAEVSVSSPEVQDKETKEEI-------------------KSD 252

  Fly   366 LPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIE 430
            .|...|:|                  ..:|   |:.|..||:.|||||||||.||.||||.||:|
 Frog   253 TPTSNWLT------------------AKSG---RKKRCPYTKHQTLELEKEFLFNMYLTRERRLE 296

  Fly   431 IAHALCLTERQIKIWFQNRRMKLKKELR--AVKEI 463
            |:.::.||:||:|||||||||||||..|  .::|:
 Frog   297 ISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIREL 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 36/51 (71%)
Abdominal-A 456..478 CDD:289192 2/10 (20%)
LOC116406456XP_002935721.1 Homeobox 267..321 CDD:365835 37/53 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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