Protein Alignment abd-A and Hoxd8

DIOPT Version :9

• Sequence 1: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: XP_038962310.1
• Gene: Hoxd8 / 100912936
• RGDID: 6489440
• Length: 292
• Species: Rattus norvegicus
• Alignment Length: 445
• Identity: 116/445 - (26%)
• Similarity: 151/445 - (33%)
• Gaps: 196/445 - (44%)

  Fly    20 ISSHHLTTTPPNSSSAAVAAALAAAAASASASVSASSSSNNNSSNTIAGSNTSNTNNSSSSPSSS 84
            :||:.:  .|..|...|.|||.|||||:|:|
  Rat     1 MSSYFV--NPLYSKYKAAAAAAAAAAAAAAA---------------------------------- 29

  Fly    85 SNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHHPQVQQQHLNHQQQQHLHHQQQQHH 149
                      |.:::|::...|..                 |:|..:|
  Rat    30 ----------GEAINPTYYDCHFA-----------------PEVSGRH----------------- 50

  Fly   150 HQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPSASGSSS 214
                  :|||||  ..:..:....|...:|.|.|.                   ||.|...|.
  Rat    51 ------AAALQL--YGNSAAGFPHAPPQAHAHPHP-------------------SPPPGCGGG-- 86

  Fly   215 LHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHP------SSHG 273
                   ..||.......|.|.|.|||..||           |....:|.....|      :.||
  Rat    87 -------GGPGPGQNYFHAGAGSPVAAYQAA-----------PPPPPHPPPPPPPPPCGGIACHG 133

  Fly   274 GLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVD 338
            ..:...|:..|:.:                  |...:.|.|:..|:...      .:|:|.||.|
  Rat   134 EPAKFYGYDNLQRQ------------------PIFTTQQEAELVQYPDC------KSSSGNIGED 174

  Fly   339 -SLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCP-RRRG 401
             ...|..:.|:.                  .:|||.                   |...| ||||
  Rat   175 PDHLNQSSSPSQ------------------MFPWMR-------------------PQAAPGRRRG 202

  Fly   402 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 456
            ||||:|||||||||||.||.||||:||||::|.|.|||||:||||||||||.|||
  Rat   203 RQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKE 257

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abd-A	NP_732176.1	Homeobox	402..454	CDD:278475	42/51 (82%)
		Abdominal-A	456..478	CDD:289192	1/1 (100%)
Hoxd8	XP_038962310.1	COG5576	143..276	CDD:227863	66/176 (38%)
		Homeobox	203..256	CDD:395001	42/52 (81%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910