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Protein Alignment abd-A and Hoxa4

DIOPT Version :9

Sequence 1:	NP_732176.1	Gene:	abd-A / 42037	FlyBaseID:	FBgn0000014	Length:	590	Species:	Drosophila melanogaster
Sequence 2:	NP_077326.1	Gene:	Hoxa4 / 100912525	RGDID:	2814	Length:	285	Species:	Rattus norvegicus

Alignment Length:	250	Identity:	87/250 - (34%)
Similarity:	109/250 - (43%)	Gaps:	60/250 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   252 SSFAIPTS----KMYPY--VSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASAS 310
            |||.|.::    |..|:  .:.|....||..|:.|..|......|.:. ...|.:.:...||..:
  Rat     4 SSFLINSNYIEPKFPPFEEFAPHGGPGGGDGGVGGGPGYPRPQSSPHL-PAPNPHAARQTPAYYA 67

  Fly   311 AQFAQFYQHA---TAAASAVSAASAGAIGVDSLGNACTQPASGVMPG------------------ 354
            .:..:...|.   .|.|:|...|..||    |.......||.|..|.
  Rat    68 PRAREPSYHGGLYPAPAAACPYACRGA----SPARPEQSPAPGAHPSPAPQPPAPPRRCAPGPTT 128

  Fly   355 -AGGAGGAG------IADL----PR------YPWMTLTDWMGSPFERVVCGDFN-GPNGCPRRRG 401
             |...||:.      :||.    |:      ||||          :::.....| ..||...:|.
  Rat   129 PAVATGGSAPACPLLLADQGPAGPKGKEPVVYPWM----------KKIHVSAVNPSYNGGEPKRS 183

  Fly   402 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 456
            |..|||.|.||||||||||.||||||||||||.|||:|||:||||||||||.||:
  Rat   184 RTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKD 238

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.