DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and barhl2

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_012817899.1 Gene:barhl2 / 100493839 XenbaseID:XB-GENE-482777 Length:359 Species:Xenopus tropicalis


Alignment Length:406 Identity:88/406 - (21%)
Similarity:128/406 - (31%) Gaps:145/406 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 GSNTSNTNNSSSSPSSSSNNNSNLNLSG----GSLSPSHLSQHLGQSPHSPVS-SSSPFQQHHPQ 127
            |.:|..:|..:.||...|.:..:...:.    |.|||......:|.||.||:| :..|..||. .
 Frog     7 GIDTILSNAGAVSPGMLSGDFRDARATDFRGQGPLSPDSEIDTVGSSPSSPISVTMEPVDQHR-L 70

  Fly   128 VQQQHLNHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPS 192
            |...|.:.|..||||..|||            ..||||                        ||.
 Frog    71 VDSVHHSAQHLQHLHPTQQQ------------SPQQQQ------------------------PPQ 99

  Fly   193 AGNSQAGDSSCSPSPSASGSSSLHRS-LNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAI 256
            .|:          :|..|.||.|.:. |.|:.|                     .||.|..|..:
 Frog   100 LGS----------APRTSTSSFLIKDILGDSKP---------------------LAACAPYSTTV 133

  Fly   257 PTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHAT 321
            |:       .:|...|.|......|                            ..:..|..|...
 Frog   134 PS-------PHHTPKHEGNGSSESF----------------------------RPKLEQEMQDGK 163

  Fly   322 AAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVV 386
            ..|..:..    .:..|..|:...:...                      ..:|....||..|. 
 Frog   164 GKAEKIRE----DLHTDIKGHGTKEEGD----------------------REITSSRESPPVRA- 201

  Fly   387 CGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 451
                ..|     |:.|..::..|..:||:.|....||:.:.|:::|.||.||:.|:|.|:||||.
 Frog   202 ----KKP-----RKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRT 257

  Fly   452 KLKKELRAVKEINEQA 467
            |.|::.....|:..:|
 Frog   258 KWKRQTAVGLELLAEA 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 21/51 (41%)
Abdominal-A 456..478 CDD:289192 2/12 (17%)
barhl2XP_012817899.1 Homeobox 208..261 CDD:365835 21/52 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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