DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and shox

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_004911874.1 Gene:shox / 100486480 XenbaseID:XB-GENE-920752 Length:334 Species:Xenopus tropicalis


Alignment Length:153 Identity:42/153 - (27%)
Similarity:61/153 - (39%) Gaps:33/153 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 DFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKL 453
            |.:|.....:||.|..:|..|..|||:.|...||.....|.|::..|.|:|.::::||||||.|.
 Frog   147 DEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKC 211

  Fly   454 KKELRAVKEINEQARRDREEQEKMKA-----------QETMKSAQQNKQ--VQQQQQQQQQQQQQ 505
            :|                :|.:..|.           .||.:.|.....  ::...||.|.|.|.
 Frog   212 RK----------------QENQMHKGGYGVILGTGSHLETCRVAPYVNMGALRMPFQQVQAQLQL 260

  Fly   506 QQQQHQQQQQQPQDHHSIIAHNP 528
            :...|    ..|..|..:.||.|
 Frog   261 EGVAH----AHPHLHPHLAAHAP 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 21/51 (41%)
Abdominal-A 456..478 CDD:289192 1/21 (5%)
shoxXP_004911874.1 Homeobox 159..213 CDD:365835 21/53 (40%)
OAR 314..330 CDD:367680
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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