DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and hoxd10

DIOPT Version :9

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_031749087.1 Gene:hoxd10 / 100038085 XenbaseID:XB-GENE-485204 Length:274 Species:Xenopus tropicalis


Alignment Length:280 Identity:75/280 - (26%)
Similarity:116/280 - (41%) Gaps:46/280 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 SAGNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAI 256
            ||.|......:...|||...|.|...|.:.:.|.:.|.|::.:....|       ...|...:.:
 Frog    10 SASNMYLPGCAYYVSPSDFSSKSSFFSQSSSCPMTLSYSSNLTHVQPV-------REVAFREYGL 67

  Fly   257 PTSKMY---PYVSNHPSS---HGGL----SGMAGFTGLEDKSCSRY--TDTVMNSYQSMSVPASA 309
            ..:|..   .|.|.:||.   |..|    :..:......|..|:.:  ..:..|.|.|:......
 Frog    68 ERTKWQYRGTYPSYYPSEEVMHRDLIQPANRRSDMLFKSDSVCNHHGPPSSQSNFYSSVGRNGIL 132

  Fly   310 SAQFAQFYQHATAAASAVSAASAG-AIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMT 373
            ...|.|||.         |:.:.| .:|::.      |||.. .|.|..|...  |...:...:|
 Frog   133 PQGFDQFYD---------SSQNQGYQVGMEE------QPAKS-DPKATNAPTK--APSTQDKKVT 179

  Fly   374 LTDWMGSPFERVVCGDFNGPNGCPRRRGRQ---TYTRFQTLELEKEFHFNHYLTRRRRIEIAHAL 435
            .....|:|     .|:....|....:|.|:   .|:::|..|||:||.||.|:.:.:|::::..|
 Frog   180 NDSSPGTP-----SGEAEKSNSSASQRLRKKRCPYSKYQIRELEREFFFNVYINKEKRLQLSRML 239

  Fly   436 CLTERQIKIWFQNRRMKLKK 455
            .||:||:||||||||||.||
 Frog   240 NLTDRQVKIWFQNRRMKEKK 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 27/54 (50%)
Abdominal-A 456..478 CDD:289192 75/280 (27%)
hoxd10XP_031749087.1 DUF3528 41..163 CDD:403310 28/144 (19%)
Homeobox 205..259 CDD:395001 26/53 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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