DRSC/TRiP Functional Genomics Resources

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Protein Alignment abd-A and hoxd3

DIOPT Version :10

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_002935734.1 Gene:hoxd3 / 100038058 XenbaseID:XB-GENE-478462 Length:415 Species:Xenopus tropicalis


Alignment Length:405 Identity:107/405 - (26%)
Similarity:150/405 - (37%) Gaps:121/405 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 GNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPT 258
            |.:.|...|.|..||           ....|.|:..|...|.|.|:..||..|            
 Frog    31 GYTYAKPESYSYGPS-----------QQQYPQSSLDSDYPSTACSIQPAAIRA------------ 72

  Fly   259 SKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAA 323
                   .||.::  .:||          ||.|.|.: .||.|:.|:    |.|     ||...:
 Frog    73 -------PNHKAN--DISG----------SCMRTTSS-QNSNQAPSI----SNQ-----QHQAPS 108

  Fly   324 ASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPR--YPWM-----------TLT 375
            ....|         .|.||:..|..|    .:..:.|:..|.|.:  :|||           |.:
 Frog   109 LPPSS---------PSHGNSSAQKKS----KSSNSSGSSQATLSKQIFPWMKESRQNAKQKNTSS 160

  Fly   376 DWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTER 440
            .....|.|.  |.: ..|.|...:|.|..||..|.:|||||||||.||.|.||:|:|:.|.||||
 Frog   161 SSSTPPGEN--CEE-KSPTGPSSKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 222

  Fly   441 QIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQQQQQ 505
            ||||||||||||.||:.:|...::..|.:..:....:.....:..:.|...|.............
 Frog   223 QIKIWFQNRRMKYKKDQKAKGIMHSPAGQSPDRSPTLSGSNHVGYSSQLPTVNSLSYDAPSPTSF 287

  Fly   506 QQQQHQQQQQQPQDHHSIIAHN-------------PG--HLHHSVVGQNDLKLGLGMGVGVGVGG 555
            .:.|        |:.:.:.|:.             ||  :.||::.|.:              |.
 Frog   288 AKSQ--------QNMYGLAAYTAPLSSCLPQQKRYPGAEYEHHTMQGNS--------------GF 330

  Fly   556 IGPGIGGG---LGGN 567
            ..|.:.|.   :|||
 Frog   331 ANPNLQGSPVYVGGN 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649 38/55 (69%)
Abdominal-A 456..478 CDD:403567 2/21 (10%)
hoxd3XP_002935734.1 Homeodomain 181..237 CDD:459649 38/55 (69%)
DUF4074 352..413 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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