Protein Alignment Ubx and Hoxa6

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 342
• Identity: 100/342 - (29%)
• Similarity: 120/342 - (35%)
• Gaps: 155/342 - (45%)

  Fly    39 AYRGFPLSLGMSPYANHHLQRTTQDSP--YDASITA-ACNKI-YGDGAGAYKQDCLNIKADAVNG 99
            |.|.||.|.|.|     .|...|..||  |..|.:. |||:. |..||..:..|
  Rat    34 ALRPFPASYGAS-----SLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSD----------- 82

  Fly   100 YKDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRP-SACTPDSR 163
             ||:                     .|...:||:.         |..|...:...| ....|||.
  Rat    83 -KDL---------------------SGASPSGNSK---------QRGPGDYLHFSPEQQYKPDSS 116

  Fly   164 VGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAA 228
                                    ||.|
  Rat   117 ------------------------SVQG------------------------------------- 120

  Fly   229 SSLHQAS-----NHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDW 288
            .:||:..     ....||||.....|                               ||::
  Rat   121 KALHEEGTDRKYTSPVYPWMQRMNSC-------------------------------AGAV---- 150

  Fly   289 LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 353
            .|::|  ||||||||||||||||||||.|.|||||||||:|:|||||||||||||||||||.|||
  Rat   151 YGSHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213

  Fly   354 IQAIKELNEQEKQAQAQ 370
            .:.|.......:.::|:
  Rat   214 NKLINSTQASGEDSEAK 230

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	50/55 (91%)
Hoxa6	NP_001178016.1	Homeodomain	156..212	CDD:459649	50/55 (91%)