DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Nkx1-1

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_035450.1 Gene:Nkx1-1 / 672284 MGIID:109346 Length:440 Species:Mus musculus


Alignment Length:338 Identity:81/338 - (23%)
Similarity:117/338 - (34%) Gaps:121/338 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ASAAAAAYRGFPLSLGMSPYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAV 97
            |..|.||....|.:.|.||.|  .|:|....:.  ..:.||..........:|:.|    :|:| 
Mouse   113 APCAPAACVAVPAASGRSPRA--ELERRALSAA--TGVAAAAGAEPTSAGDSYRAD----EAEA- 168

  Fly    98 NGYKDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAA-------------NANGQNNP-- 147
            |||                       :.|:|.:..|:..:.|             :|.|...|  
Mouse   169 NGY-----------------------SSGSGRSPTADSEDEAPEDEDEEEAPEVQDAQGTEEPRG 210

  Fly   148 -AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVA-GAGT 210
             :||:..|.|.|...:.|       ..|||.        :.:..|..||:.|.......| |||:
Mouse   211 GSGGLGARGSGCPGAAEV-------EASPVD--------DTAAPGPRGNSPGAPGPPATATGAGS 260

  Fly   211 AWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKR 275
            |        |:..|.||.::                     .|.:.:..||              
Mouse   261 A--------GSTPQGAAVTT---------------------KPKRKRTGSD-------------- 282

  Fly   276 YSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIK 340
                          ..:|..||.|..:|..|.:.||.:|....||:...|:.:|.:|.|||.|:|
Mouse   283 --------------SKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVK 333

  Fly   341 IWFQNRRMKLKKE 353
            |||||||.|.||:
Mouse   334 IWFQNRRTKWKKQ 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 26/55 (47%)
Nkx1-1NP_035450.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..82
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..291 43/245 (18%)
Homeodomain 289..345 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 342..387 3/5 (60%)
Blue background indicates that the domain is not in the aligned region.

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