Protein Alignment Ubx and Cdx2

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 278
• Identity: 79/278 - (28%)
• Similarity: 111/278 - (39%)
• Gaps: 81/278 - (29%)

  Fly   119 GGGGGAGGTGGAGNANGGNAANANGQNNP-AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGS 182
            ||...|.....|.|.   ::|.:.|.:.| |.|.|:|.             |.:|.:|    ||:
  Rat    41 GGYHVAAAAAAAANL---DSAQSPGPSWPTAYGAPLRE-------------DWNGYAP----GGA 85

  Fly   183 AGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAG 247
            |..|....|.||.:.....|.                   :..|...:.|...:|..:|  |.|.
  Rat    86 AAANAVAHGLNGGSPAAAMGY-------------------SSPAEYHAHHHPHHHPHHP--AAAP 129

  Fly   248 EC---------PEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDW--------LGTNGLR 295
            .|         |..|            |..:|...::.|.|.....|.:|        ||:....
  Rat   130 SCASGLLQTLNPGPP------------GPAATAAAEQLSPSGQRRNLCEWMRKPAQPSLGSQVKT 182

  Fly   296 R---RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI 357
            |   :.|..||.:|.||||||||.:.|:|.||:.|:|..|.|:|||:||||||||.|.:|
  Rat   183 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK----- 242

  Fly   358 KELNEQEKQAQAQKAAAA 375
              :|:::.|.|.|:...|
  Rat   243 --INKKKLQQQQQQQPPA 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	33/58 (57%)
Cdx2	NP_076453.1	Caudal_act	13..178	CDD:461413	39/189 (21%)
		Homeodomain	187..242	CDD:459649	32/54 (59%)