DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Vax1

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_072158.1 Gene:Vax1 / 64571 RGDID:621132 Length:336 Species:Rattus norvegicus


Alignment Length:134 Identity:44/134 - (32%)
Similarity:60/134 - (44%) Gaps:28/134 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 GISTDMGKRYSESLA--------------GS----LLPDWLGTNGLRRRGRQTYTRYQTLELEKE 313
            |.|.|..|..|.|.|              ||    :||..|..: ..:|.|.::|..|...||.|
  Rat    55 GASEDCNKSKSNSSADPDYCRRILVRDAKGSIREIILPKGLDLD-RPKRTRTSFTAEQLYRLEME 118

  Fly   314 FHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAA 378
            |....|:..|.|.|:|..|.|:|.|:|:||||||.|.||         :|.|.::.:...:..||
  Rat   119 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK---------DQGKDSELRSVVSETAA 174

  Fly   379 AAAV 382
            ..:|
  Rat   175 TCSV 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 25/55 (45%)
Vax1NP_072158.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..69 6/13 (46%)
vax upstream domain 72..99 5/27 (19%)
homeobox 100..159 27/67 (40%)
Homeodomain 101..157 CDD:459649 25/55 (45%)
vax downstream domain 178..189 1/1 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..267
vax terminal domain 315..323
Blue background indicates that the domain is not in the aligned region.

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