Protein Alignment Ubx and hoxc13a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_571618.1
• Gene: hoxc13a / 58059
• ZFINID: ZDB-GENE-000822-4
• Length: 306
• Species: Danio rerio
• Alignment Length: 287
• Identity: 73/287 - (25%)
• Similarity: 103/287 - (35%)
• Gaps: 73/287 - (25%)

  Fly   140 NANGQNNP------AGGMPV---RPSACTPD-SRVGGYLDTSGGS--------------PVSHRG 180
            |.|.||..      :|..|.   |.....|. .|..|.:.|..||              |.....
Zfish    24 NENNQNKSQIMEGLSGNCPATHCRELISHPALGRHSGTIATHQGSVYSDISSPETGRQCPAPQTS 88

  Fly   181 GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNAN-----CTISGAAAQTAAASSL------HQA 234
            .||..:.....||...|        .....:.|.|     |:...|......:|:|      .:|
Zfish    89 SSASLSYGYPFGNPYYG--------CRLSHSHNVNLQQKPCSYHPAEKYAETSSALPTEELSSRA 145

  Fly   235 SNHTFYP-----WMAIAGEC-----------PEDPTKSKIRSDLTQYGGISTDM-GKRY------ 276
            ....|||     :.|:.|..           ||....:.|..:..|:..:|... |:.|
Zfish   146 KEFAFYPSLASSYQAVPGYLDMSVVPSISVHPEPRHDALIPMEGYQHWALSNGWDGQVYCSKEQT 210

  Fly   277 -SESLAGSLLPDWLGTN---GLRRRGRQ---TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCL 334
             |..|..|..||.:...   ...||||:   .||:.|..|||||:..:.::|:.:|..::....|
Zfish   211 QSSHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKIQLKELEKEYAASKFITKDKRRRISATTNL 275

  Fly   335 TERQIKIWFQNRRMKLKKEIQAIKELN 361
            :|||:.|||||||:|.||.:...|..|
Zfish   276 SERQVTIWFQNRRVKEKKFVSKSKTNN 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	26/58 (45%)
hoxc13a	NP_571618.1	HoxA13_N	34..144	CDD:463521	21/117 (18%)
		Homeodomain	237..293	CDD:459649	23/55 (42%)