DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and hoxa3a

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_571609.2 Gene:hoxa3a / 58049 ZFINID:ZDB-GENE-000823-3 Length:410 Species:Danio rerio


Alignment Length:233 Identity:74/233 - (31%)
Similarity:99/233 - (42%) Gaps:27/233 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 RPSACTPDSRVGGYLDTSGG-SPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCT 217
            ||:.......:...|.||.. |.|..:.......|:.:..|.......||   ..:.::.|....
Zfish    45 RPACSLQSPGISAGLHTSNEMSEVCQQINGTQATVTDTSDNKQPPTAPSG---PSSPSSLNQIPN 106

  Fly   218 ISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAG 282
            |..||......|.......|.| |||..:    ...||.|..|.::             .||.||
Zfish   107 IDSAAKNPVHVSPTPSTRKHIF-PWMKES----RQNTKQKSCSIIS-------------VESCAG 153

  Fly   283 SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRR 347
            ...|.   .:...:|.|..||..|.:|||||||.|.||.|.||:|||:.|.||||||||||||||
Zfish   154 DKSPP---GSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 215

  Fly   348 MKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGG 385
            ||.||:.:.:..:  ....||:..:..:.::.....||
Zfish   216 MKYKKDQKGLGMM--PSPGAQSPHSPVSLSSGGGGGGG 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 38/55 (69%)
hoxa3aNP_571609.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 79..126 9/49 (18%)
Antp-type hexapeptide 127..132 3/5 (60%)
Homeodomain 164..220 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..249 2/28 (7%)
DUF4074 346..408 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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