DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ubx and hoxc1a

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_571606.1 Gene:hoxc1a / 58046 ZFINID:ZDB-GENE-000822-2 Length:302 Species:Danio rerio


Alignment Length:144 Identity:55/144 - (38%)
Similarity:71/144 - (49%) Gaps:33/144 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 SGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGIS-----TDMGKRYSE 278
            :|..|......:||  |..|| .||.:        .:::.|:...|.|..|     |:.|:...|
Zfish   158 TGHGALNTLNETLH--SGKTF-EWMRV--------RRNQSRAAKIQLGKCSDRELKTNHGRDSDE 211

  Fly   279 --SLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKI 341
              |..||               |..:|..|..|||||||.|.||||.||||:|:.|.|:|.|:||
Zfish   212 DTSSGGS---------------RTNFTTKQLTELEKEFHFNKYLTRARRIEIANPLQLSETQVKI 261

  Fly   342 WFQNRRMKLKKEIQ 355
            ||||||||.||.::
Zfish   262 WFQNRRMKQKKMLR 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 34/55 (62%)
hoxc1aNP_571606.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..224 7/40 (18%)
Homeodomain 218..272 CDD:459649 35/68 (51%)

Return to query results.
Submit another query.