Protein Alignment Ubx and msx2a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001025440.1
• Gene: msx2a / 573620
• ZFINID: ZDB-GENE-980526-322
• Length: 257
• Species: Danio rerio
• Alignment Length: 151
• Identity: 45/151 - (29%)
• Similarity: 60/151 - (39%)
• Gaps: 43/151 - (28%)

  Fly   256 SKIRSDLTQYGGI----------------STDMGKRYSESLAGSLLPDWLGTNGL---------- 294
            :|.||:.|..|.|                |.|..||...:...|   .|:....|
Zfish    51 TKERSESTSRGSIHMTRIINQDDRSIYSDSVDFTKRCESAKEDS---SWINKPRLSTSPRSQSPT 112

  Fly   295 ---------RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 350
                     .|:.|..:|..|.|.||::|....||:...|.|.:.:|.|||.|:||||||||.|.
Zfish   113 ICPLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 177

  Fly   351 KKEIQAIKELNEQEKQAQAQK 371
            |:..:|     |.|:...|.|
Zfish   178 KRLQEA-----ELERFKMASK 193

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	26/55 (47%)
msx2a	NP_001025440.1	Homeodomain	123..179	CDD:459649	26/55 (47%)