Protein Alignment Ubx and hoxc12a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001104229.1
• Gene: hoxc12a / 562600
• ZFINID: ZDB-GENE-000822-6
• Length: 274
• Species: Danio rerio
• Alignment Length: 273
• Identity: 69/273 - (25%)
• Similarity: 107/273 - (39%)
• Gaps: 76/273 - (27%)

  Fly   133 ANGGNAANANGQNNPAGGMPVRPSACT----PDSRVGGYLDTSGGSPVS---------------- 177
            |:||..|..     |:...|.|.:.|:    |.....||..:...||||
Zfish    31 ASGGQLAGL-----PSLSYPRRDNVCSLPWNPSESCNGYPQSYFSSPVSINPSFNRSCEITRLEE 90

  Fly   178 ---HRGGSAGGNVSVSGGN-------------GNAGGVQSGVGVAGA------GTAWNANCTISG 220
               :.|.|:....|.|..|             .:..|:.:|:|.:|.      ||........|.
Zfish    91 SKCYYGNSSSTRDSCSDNNSLKREERARDTSVSSDHGMHNGMGNSGTFSKYDYGTEHLTQDPPSC 155

  Fly   221 AAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLL 285
            .:.::.::||:......|          ...||      ..|...|        .::.::||...
Zfish   156 QSLESDSSSSVLNEGGKT----------SASDP------QTLVSQG--------NHASNIAGGGG 196

  Fly   286 PDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 350
            ..|...:...|:.|:.|::.|..|||.||..|.::||:||.|::..|.|:::|:||||||||||.
Zfish   197 APWYPMHTRTRKKRKPYSKLQLAELEGEFMLNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKK 261

  Fly   351 KKEIQAIKELNEQ 363
            |:.:     |.||
Zfish   262 KRLL-----LREQ 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	28/55 (51%)
hoxc12a	NP_001104229.1	Homeodomain	207..263	CDD:459649	28/55 (51%)