DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Bsx

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001178924.1 Gene:Bsx / 500982 RGDID:1565120 Length:232 Species:Rattus norvegicus


Alignment Length:123 Identity:38/123 - (30%)
Similarity:57/123 - (46%) Gaps:25/123 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 PDWLGTNGL--------------------RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAH 330
            |.:|.|:|:                    ||:.|..::..|...|||.|....||:...|:|:|.
  Rat    81 PYFLATSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELAT 145

  Fly   331 ALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLD 388
            ||.|:|.|:|.||||||||.||:::     ..|::...|....:...:..|.:|...|
  Rat   146 ALSLSETQVKTWFQNRRMKHKKQLR-----KSQDEPKAADGPESPEGSPRAPEGAPAD 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 26/55 (47%)
BsxNP_001178924.1 Homeodomain 111..167 CDD:459649 26/55 (47%)

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