DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and LOC4576841

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:XP_001230938.4 Gene:LOC4576841 / 4576841 VectorBaseID:AGAMI1_003921 Length:540 Species:Anopheles gambiae


Alignment Length:398 Identity:86/398 - (21%)
Similarity:126/398 - (31%) Gaps:163/398 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GHPHQATGMAMGSGGHHDQTASAA---AAA--------YRG-FPLSLGMSPYANHHLQRTTQD-- 63
            || |.|..:|.....||...:|:.   ||:        .|| .|:...:.|...|:..|...|  
Mosquito   228 GH-HPAAHLAAAHHHHHHHHSSSTLQQAASKIVRPWDHLRGPIPVRPFLPPALLHYEHRLALDYH 291

  Fly    64 -------------------------SPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDI 103
                                     |..:.|.:||             .||.:.:....:.::..
Mosquito   292 QQLQEHFRAQAQLLRHMSMDIIPSESGSERSSSAA-------------SDCCSPEIGRGSDHQSH 343

  Fly   104 WNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYL 168
            .::..|:.|.|||..|.|.|:|.:|..|.|:|  ||.:..:..|.|         ||       |
Mosquito   344 QSSQSSSSGVGGGSAGAGDGSGRSGANGGASG--AAKSGSKTAPNG---------TP-------L 390

  Fly   169 DTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQ 233
            |                                                            :|.|
Mosquito   391 D------------------------------------------------------------ALFQ 395

  Fly   234 ASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRG 298
            .:|..|       .|..||..:|.:                   ...|....|.      .:|:.
Mosquito   396 MTNKNF-------DESNEDSEQSHL-------------------NLFANRPQPK------KKRKS 428

  Fly   299 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQ 363
            |..:|.:|..||||.|....||:...|.|:|.||.|:..|:..||||||.|||::::.:|:..|.
Mosquito   429 RTAFTNHQIFELEKRFLYQKYLSPSDRDEIAAALGLSNAQVITWFQNRRAKLKRDMEELKKDVET 493

  Fly   364 EKQAQAQK 371
            .|...|.|
Mosquito   494 VKVLSAHK 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 26/55 (47%)
LOC4576841XP_001230938.4 None

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