DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and tin

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster


Alignment Length:397 Identity:93/397 - (23%)
Similarity:132/397 - (33%) Gaps:114/397 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 HHDQTASAAAAAYRGFPLSLGMSPYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNI 92
            ||.|.|.:..              |.:|:.|     ||...|:|.|              |.||.
  Fly     4 HHQQQAQSGG--------------YYDHYTQ-----SPSPGSLTNA--------------DALNT 35

  Fly    93 KADAVNGYKDIWNTGGSNGGGGGGGG--GGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPV-- 153
            ...:|   |||.|.........|..|  .|...|.....||.....: ...|.|.:....:|:  
  Fly    36 TPFSV---KDILNMVNQTEAYEGSYGHIDGAATASALFAAGEYQNPH-QYLNHQQHQQSELPIPQ 96

  Fly   154 --------RPSACT-----------PDSRVGGYLDTSGGSPV---SHRGGSAGGNV--SVSGGNG 194
                    ...|.|           |....|||.|.  |.|.   .|..|....:.  |.|..|.
  Fly    97 QQLHHQHLDDGATTSSSLSPLLPPPPHQLYGGYQDY--GMPAHMFQHHHGHPHQSFQHSASAYNM 159

  Fly   195 NAGGVQSGVGVAGAGT--AWNANCTISGAAAQTAAASSLHQASNH------TFYPWMAIAGECPE 251
            :|....:|.......|  .:|.|...||.....|..|::...|.:      |..|.:.:......
  Fly   160 SASQFYAGASATAYQTPATYNYNYAGSGEVYGGATPSAVGIKSEYIPTPYVTPSPTLDLNSSAEV 224

  Fly   252 D----PTKSKIRSDLTQ---------------YGG-----------ISTDMGKRYSESLAGSLLP 286
            |    ||:....:.|:|               ||.           :::...:....|::|:..|
  Fly   225 DSLQAPTQKLCVNPLSQRLMETASNSSSLRSIYGSDEGAKKKDNSQVTSSRSELRKNSISGNSNP 289

  Fly   287 DWLGTNG------LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 345
               |:|.      ::|:.|..:::.|.||||..|....|||...|..:|..|.|:..|:||||||
  Fly   290 ---GSNSGSTKPRMKRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQN 351

  Fly   346 RRMKLKK 352
            ||.|.|:
  Fly   352 RRYKSKR 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 25/55 (45%)
tinNP_524433.1 Homeodomain 302..358 CDD:459649 25/55 (45%)

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