DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Nanog

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001094251.1 Gene:Nanog / 414065 RGDID:1303178 Length:312 Species:Rattus norvegicus


Alignment Length:157 Identity:33/157 - (21%)
Similarity:67/157 - (42%) Gaps:33/157 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 CTISGAAAQTAAASSLHQASNHTFYPWMAIAG-ECPEDPTKSKIRSDLTQYGGISTDMGKRYSES 279
            ||.:.:...::....|..:.:.:..|.:.::| |..|.|.|.:....||:               
  Rat    48 CTETASPPPSSGDLPLQDSPDSSSNPKLKLSGPEADEGPEKKEENKVLTK--------------- 97

  Fly   280 LAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 344
                           :::.|..:::.|...|:..|....||:.::..:::..|.|:.:|:|.|||
  Rat    98 ---------------KQKMRTVFSQAQLCALKDRFQRQRYLSLQQMQDLSTILNLSYKQVKTWFQ 147

  Fly   345 NRRMKLKK--EIQAIKELNEQEKQAQA 369
            |:|||.|:  :.|.:|..|...::..|
  Rat   148 NQRMKCKRWQKNQWLKTSNGLTQKGSA 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 17/55 (31%)
NanogNP_001094251.1 Homeodomain 100..155 CDD:459649 17/54 (31%)
PTZ00395 <184..>291 CDD:185594
Blue background indicates that the domain is not in the aligned region.

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