Protein Alignment Ubx and Scr

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 402
• Identity: 122/402 - (30%)
• Similarity: 148/402 - (36%)
• Gaps: 142/402 - (35%)

  Fly     2 NSYFEQASGFYGH-------PHQATGMAMGSGGHHD-----------------------QTASAA 36
            |.||..|:.:..:       .|.|...|.|..|:.|                       |.|.||
  Fly    73 NDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAA 137

  Fly    37 AAAYRGFPLSLGMSPYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYK 101
            ||.            .|....|...|..|....                :|...||.....|
  Fly   138 AAV------------AAQQQQQLAQQQHPQQQQ----------------QQQQANISCKYAN--- 171

  Fly   102 DIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMP-------VRPSACT 159
            |....|||          ||||..|:.     |..|:||:|..|:.:...|       :.|. .:
  Fly   172 DPVTPGGS----------GGGGVSGSN-----NNNNSANSNNNNSQSLASPQDLSTRDISPK-LS 220

  Fly   160 PDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTI------ 218
            |.|.|.....:.....:   |||.....:.:|.|.|    .||.||:|.  ..|.|..:
  Fly   221 PSSVVESVARSLNKGVL---GGSLAAAAAAAGLNNN----HSGSGVSGG--PGNVNVPMHSPGGG 276

  Fly   219 -------SGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRY 276
                   ||..|.::..|...:.:....||||.              |..|    |.||
  Fly   277 DSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMK--------------RVHL----GTST------ 317

  Fly   277 SESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKI 341
                        :..||..:|.|.:||||||||||||||.|.|||||||||:|||||||||||||
  Fly   318 ------------VNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 370

  Fly   342 WFQNRRMKLKKE 353
            ||||||||.|||
  Fly   371 WFQNRRMKWKKE 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	47/55 (85%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	47/55 (85%)