DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and lab

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster


Alignment Length:411 Identity:107/411 - (26%)
Similarity:143/411 - (34%) Gaps:126/411 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EQA--SGFYGHPHQATGM----AMGSGGHHDQTASAAAAAYRGFPL----SLGMSPYANHHLQRT 60
            :||  |..:.|.....|.    ||.|.|.|       |..:.|.|.    :|..:|:......:.
  Fly   257 QQATQSQMWHHQQHLAGSYALDAMDSLGMH-------AHMHHGLPHGHLGNLANNPHQQQPQVQQ 314

  Fly    61 TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAG 125
            .|..|:...     .........|::|...|          .:...||.|....||....|....
  Fly   315 QQQQPHQQP-----QHPQNQSPAAHQQHHQN----------SVSPNGGMNRQQRGGVISPGSSTS 364

  Fly   126 GTGGAGNANGGNAANANG------------------QNNPAGGMPVRPS---ACTPDSRVGGYLD 169
            .:..|  :||.:.|:...                  :|.|....|..|:   |...|.::.|.||
  Fly   365 SSTSA--SNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLD 427

  Fly   170 TSGGSPVSHRGGSAGGNVSVSG-GNGNAG-GVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLH 232
            ..       |||..||    || |||..| |.....|:.|..:..|:....:.|    |||.|.|
  Fly   428 MC-------RGGGGGG----SGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSA----AAAGSAH 477

  Fly   233 QASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR 297
            .                                .|:...:|       :||.|.....::.....
  Fly   478 P--------------------------------NGMGVGLG-------SGSGLSSCSLSSNTNNS 503

  Fly   298 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ------- 355
            ||..:|..|..|||||||.|.||||.||||:|:.|.|.|.|:||||||||||.||.::       
  Fly   504 GRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPAD 568

  Fly   356 --------AIKELNEQEKQAQ 368
                    .|.|...|::|.|
  Fly   569 ILTQHSTSVISEKPPQQQQPQ 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 35/55 (64%)
labNP_476613.1 Homeodomain 505..558 CDD:459649 34/52 (65%)

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