Protein Alignment Ubx and cdx1a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 254
• Identity: 68/254 - (26%)
• Similarity: 105/254 - (41%)
• Gaps: 65/254 - (25%)

  Fly   136 GNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQ 200
            ||.|.....:.|  .:.|.|||..||  ..||          |.|.:.|.::..:|.:.:.|
Zfish    13 GNPARHLNLSQP--HLNVYPSAPYPD--YSGY----------HPGPALGNDLHHTGSSWSPG--- 60

  Fly   201 SGVG-------VAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKI 258
            .|.|       :.|.||..    ::.....:.:...|:.|.         .::|.    |...:.
Zfish    61 FGPGSRDDWPPLYGHGTGH----SLPANGVEVSVLPSVDQG---------LLSGA----PVDREE 108

  Fly   259 RSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRR 323
            ..|..:...:.|:.|                |....:.:.|..|:..|.||||||||.:.|:|.|
Zfish   109 PQDWMRRSAVPTNPG----------------GKTRTKDKYRVVYSDVQRLELEKEFHFSRYITIR 157

  Fly   324 RRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAV 382
            |:.|:|..|.|:|||:||||||||.|.:|       :|::..| |.|::::..|....|
Zfish   158 RKAELAGTLNLSERQVKIWFQNRRAKERK-------MNKKRLQ-QVQQSSSGLANTTTV 208

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	31/55 (56%)
cdx1a	NP_998001.2	Caudal_act	11..123	CDD:461413	28/143 (20%)
		Homeodomain	131..186	CDD:459649	31/54 (57%)