Protein Alignment Ubx and cdx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_989416.1
• Gene: cdx1 / 395055
• XenbaseID: XB-GENE-485396
• Length: 262
• Species: Xenopus tropicalis
• Alignment Length: 185
• Identity: 57/185 - (30%)
• Similarity: 85/185 - (45%)
• Gaps: 27/185 - (14%)

  Fly   224 QTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLP-- 286
            |.....|.:..|...::|:....|....:|  ::|....:.|..:..........||..|:.|
 Frog    57 QPGGTWSSYTPSREDWHPYGPGPGASSANP--AQISFSPSDYNPVQPPGPGLLPPSLNSSVSPLS 119

  Fly   287 ---------DWL---------GTNGLRR---RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAH 330
                     :|:         .:||..|   :.|..||.:|.||||||||.:.|:|.||:.|:|.
 Frog   120 PSAQRRNLYEWMRRTGVPTSTNSNGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAA 184

  Fly   331 ALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGG 385
            :|.|||||:||||||||.|.:|..:  |::.:|.:||........:....|..||
 Frog   185 SLALTERQVKIWFQNRRAKERKVNK--KKMQQQSQQASTTTPTPPSVGTTAGMGG 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	34/58 (59%)
cdx1	NP_989416.1	Caudal_act	13..141	CDD:461413	13/85 (15%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	42..120		12/64 (19%)
		Homeodomain	151..206	CDD:459649	33/54 (61%)
		Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902	152..173		12/20 (60%)
		Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902	191..202		9/10 (90%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	203..262		9/37 (24%)