Protein Alignment Ubx and msx2

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: XP_002936749.1
• Gene: msx2 / 394987
• XenbaseID: XB-GENE-852974
• Length: 256
• Species: Xenopus tropicalis
• Alignment Length: 154
• Identity: 50/154 - (32%)
• Similarity: 73/154 - (47%)
• Gaps: 24/154 - (15%)

  Fly   218 ISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDP--TK----SKIRSDLTQYGGISTDMGKRY 276
            :.|..|..|.::..|.   |     |.|. :.|..|  ||    |.::|:.::.|...:..|..|
 Frog    56 LRGVDASAAGSTPRHL---H-----MGIR-DSPSPPGLTKTFETSSVKSENSEDGTTWSKDGGSY 111

  Fly   277 S---ESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQ 338
            |   ..|:.|...  |..:...|:.|..:|..|.|.||::|....||:...|.|.:.:|.|||.|
 Frog   112 SPPPRHLSPSTCT--LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQ 174

  Fly   339 IKIWFQNRRMKLKK----EIQAIK 358
            :||||||||.|.|:    ||:.:|
 Frog   175 VKIWFQNRRAKAKRLQEAEIEKLK 198

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	26/55 (47%)
msx2	XP_002936749.1	Homeodomain	132..188	CDD:459649	26/55 (47%)