Protein Alignment Ubx and msx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001032329.1
• Gene: msx1 / 394692
• XenbaseID: XB-GENE-490378
• Length: 275
• Species: Xenopus tropicalis
• Alignment Length: 250
• Identity: 69/250 - (27%)
• Similarity: 91/250 - (36%)
• Gaps: 79/250 - (31%)

  Fly   141 ANGQNNP--AGGMPVRPSACTPDSRVGGYLDTSG--GSPV---SHR---GGSAGG---NVSVSGG 192
            |.|::.|  .|.:|....|...|.:.|...|.|.  |||:   ||.   |..|.|   |..:|.|
 Frog    32 ALGEDKPKVPGILPFSVEALMADRKPGRERDLSSPTGSPLAGTSHSPRVGSLAPGETPNSPISIG 96

  Fly   193 NG-NAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGEC---PEDP 253
            |. ..||:                                           |.:..|.   ||.|
 Frog    97 NRFPVGGI-------------------------------------------MKLPEEALVKPESP 118

  Fly   254 TKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPD--WLGTNGLRRRGRQTYTRYQTLELEKEFHT 316
            .:|            |.....|:|.|....:.|.  .|..:...|:.|..:|..|.|.||::|..
 Frog   119 ERS------------SWIQSPRFSPSPTRRMSPPACTLRKHKTNRKPRTPFTTSQLLALERKFRQ 171

  Fly   317 NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQK 371
            ..||:...|.|.:.:|.|||.|:||||||||.|.|:..:|     |.||...|.|
 Frog   172 KQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEA-----ELEKLKMAAK 221

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	26/55 (47%)
msx1	NP_001032329.1	PTZ00449	<55..>259	CDD:185628	61/226 (27%)
		Homeodomain	151..207	CDD:459649	26/55 (47%)