Protein Alignment Ubx and Lmx1a

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Alignment Length: 446
• Identity: 87/446 - (19%)
• Similarity: 129/446 - (28%)
• Gaps: 161/446 - (36%)

  Fly    14 HPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRTTQDSPYD----------- 67
            ||||          .|.|.....||:....|::...:|..:..|..::.:|.::
  Fly    90 HPHQ----------QHQQHQQQHAASTTPVPINSCPTPTGHSPLSSSSSNSNHNNNNNNNNGGSS 144

  Fly    68 -ASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGG---------------- 115
             .::.:|||.:......|       ..|.||........:..::..||.
  Fly   145 SNNLHSACNTLTAAAVAA-------ASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAAAAT 202

  Fly   116 ---GGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYL--DTSGGSP 175
               ..|....|:|...|:||.||....|.||..|..||     .|.|..:.....|  |.||.:.
  Fly   203 TPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGG-----GAATASAAAASKLSADCSGRTE 262

  Fly   176 VSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY 240
            |.|.  ....|..:..|.|.....:..:.|..|.  |:..|     .|.......||    ||.|
  Fly   263 VGHI--KCEKNFELCEGCGQKIHDRFLMNVGDAN--WHEQC-----LACCYCGMQLH----HTCY 314

  Fly   241 PWMAIAGECPEDPTKSKI--RSDLTQYGGISTDMGKRYSESLAGSLLPDWL-------------- 289
                        ...||:  :.|..:..|:.       ..|...::||..|
  Fly   315 ------------VRNSKLYCKMDYDRLFGVK-------CSSCCHAILPQELVMRPIPNFVFHLPC 360

  Fly   290 --------------------------------------------GTNGL----------RRRG-- 298
                                                        |..||          .|||
  Fly   361 FVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPK 425

  Fly   299 --RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352
              |...|..|..:.:..|..:....|:.|..:|....|:.|.:::||||:|.|:||
  Fly   426 RPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKK 481

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	18/59 (31%)
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	15/74 (20%)
		LIM	333..388	CDD:413332	4/61 (7%)
		Homeodomain	425..481	CDD:459649	15/55 (27%)