Protein Alignment Ubx and CG4328

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Alignment Length: 442
• Identity: 84/442 - (19%)
• Similarity: 130/442 - (29%)
• Gaps: 146/442 - (33%)

  Fly    44 PLSLGMSP-------------------------YANHHLQRTTQDSPYDASITAACNKIYGDGAG 83
            |:.:||.|                         ..|.:.:..|..:....|:..|..:.....||
  Fly     7 PMQIGMFPMDIKCQQQQLGAGQLPQTGGLNQLLLLNGNERMLTTPTTAATSVVVAAGRSASTKAG 71

  Fly    84 AYKQDCLNIKADAVNGYKDIWNTGGSN------------------GGGGGGGGGGGGGAGGTGGA 130
            ....|.:...:..|||.....|:..|:                  |.|.|.|.|.|.|.|...|.
  Fly    72 VAHNDKMASVSRTVNGSCSNHNSSNSSSSSSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHGPGP 136

  Fly   131 GNANGGN-----AANANGQNNPAGGMPVRPSAC--TPDSRVGGYLDTSGGSPVSHRGGSAGGNVS 188
            .|....|     ..:.||.:..|  .|..|.:.  ||.:.:
  Fly   137 PNHTHCNRITLGECSLNGMDGFA--TPAAPPSASNTPQAPL------------------------ 175

  Fly   189 VSGGNGNAG-GVQSGVGVAGAGTAWNANC--TISGAAAQTAAASSLHQ-------ASNHTFYPWM 243
              |...|:| |::.|:.:|....:..|:|  .|..........:|.|:       .|.|..:...
  Fly   176 --GMASNSGMGMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCY 238

  Fly   244 AIAGE--CPEDPTKSKIRSDLTQYG---------------------------GISTDMGKRY--- 276
            |..|:  |..|..:..||:.....|                           |.....|::|
  Fly   239 AREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVK 303

  Fly   277 -------------SESLAG------SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTR 322
                         .|.|.|      .|.|..|......:|.|......|....:..|..:....|
  Fly   304 QGQLFCRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCR 368

  Fly   323 RRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAA 374
            :.|..:|....|:.|.:::||||:|.|:||       :.::.||....|.|:
  Fly   369 KVRENLAKDTGLSLRIVQVWFQNQRAKVKK-------IQKKAKQEPPSKGAS 413

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	15/55 (27%)
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	11/51 (22%)
		LIM	259..313	CDD:413332	4/53 (8%)
		COG5576	<332..439	CDD:227863	23/89 (26%)
		HOX	341..393	CDD:197696	13/51 (25%)