DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Awh

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster


Alignment Length:102 Identity:28/102 - (27%)
Similarity:46/102 - (45%) Gaps:7/102 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 YSESLAGSLLPDWLGTNG------LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCL 334
            |.|::.|.......|.:|      ..:|.|.|:|..|...|:..|..:.....:....:|....|
  Fly   123 YLETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGL 187

  Fly   335 TERQIKIWFQNRRMKLKKEIQAIK-ELNEQEKQAQAQ 370
            ::|..::||||.|.:.||.|.|.| ::.|.|..:.|:
  Fly   188 SKRVTQVWFQNSRARQKKHIHAGKNKIREPEGSSFAR 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 15/55 (27%)
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765 28/102 (27%)
Homeodomain 149..205 CDD:459649 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.

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