Protein Alignment Ubx and gsb

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_523863.1
• Gene: gsb / 38005
• FlyBaseID: FBgn0001148
• Length: 427
• Species: Drosophila melanogaster
• Alignment Length: 295
• Identity: 69/295 - (23%)
• Similarity: 101/295 - (34%)
• Gaps: 98/295 - (33%)

  Fly   135 GGNAANANGQNNPAGG-------MP--------------VRPSACTPDSRVGGYLDTSGGSPVSH 178
            ||......|:.|..||       :|              |||...:...|            |||
  Fly    13 GGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLR------------VSH 65

  Fly   179 RGGSAGGNVS-VSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAA------ASSLHQASN 236
                  |.|| :.......|.::.||              |.|:..:.|.      ...|.| |.
  Fly    66 ------GCVSKILNRFQETGSIRPGV--------------IGGSKPRVATPDIESRIEELKQ-SQ 109

  Fly   237 HTFYPW-----MAIAGECPED--PTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNG- 293
            ...:.|     :..||.|.:.  |:.|.|...|....|..|      |.|:.| :|....|:.|
  Fly   110 PGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGSGT------SHSIDG-ILGGGAGSVGS 167

  Fly   294 ----------------LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIW 342
                            .:||.|.|::..|...||:.|....|.....|.|:|.:..|||.::::|
  Fly   168 EDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVW 232

  Fly   343 FQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAA 377
            |.|||.:|:      |:||.|:..:.|..:.:..|
  Fly   233 FSNRRARLR------KQLNTQQVPSFAPTSTSFGA 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	21/55 (38%)
gsb	NP_523863.1	PAX	19..143	CDD:128645	31/156 (20%)
		Homeodomain	186..242	CDD:459649	21/61 (34%)