DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Hoxc9

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001094377.1 Gene:Hoxc9 / 368178 RGDID:1595784 Length:260 Species:Rattus norvegicus


Alignment Length:102 Identity:49/102 - (48%)
Similarity:64/102 - (62%) Gaps:17/102 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 SESLAGSL-------------LPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEM 328
            :::||||.             :.:|:.....|:: |..||:||||||||||..|.||||.||.|:
  Rat   162 ADALAGSKHKEEKADLDPSNPVANWIHARSTRKK-RCPYTKYQTLELEKEFLFNMYLTRDRRYEV 225

  Fly   329 AHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEK 365
            |..|.|||||:||||||||||:||   ..||..::|:
  Rat   226 ARVLNLTERQVKIWFQNRRMKMKK---MNKEKTDKEQ 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 38/55 (69%)
Hoxc9NP_001094377.1 Hox9_act 1..179 CDD:461369 4/16 (25%)
Homeodomain 193..241 CDD:459649 32/48 (67%)

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