DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and PDX1

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_000200.1 Gene:PDX1 / 3651 HGNCID:6107 Length:283 Species:Homo sapiens


Alignment Length:90 Identity:45/90 - (50%)
Similarity:52/90 - (57%) Gaps:18/90 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL 360
            :|.|..|||.|.|||||||..|.|::|.||:|:|..|.||||.|||||||||||.|||       
Human   147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE------- 204

  Fly   361 NEQEKQAQAQKAAAAAAAAAAVQGG 385
             |.:|:          ....||.||
Human   205 -EDKKR----------GGGTAVGGG 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 36/55 (65%)
PDX1NP_000200.1 Transactivation domain. /evidence=ECO:0000250 13..73
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..71
Antp-type hexapeptide 118..123
Homeodomain 147..203 CDD:459649 36/55 (65%)
Nuclear localization signal. /evidence=ECO:0000250 197..203 4/5 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..283 9/36 (25%)
Blue background indicates that the domain is not in the aligned region.

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