Protein Alignment Ubx and Cdx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001406562.1
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 155
• Identity: 53/155 - (34%)
• Similarity: 71/155 - (45%)
• Gaps: 41/155 - (26%)

  Fly   220 GAAAQT---AAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLA 281
            |..||:   ..|.|.......|.|.||               |.::...||             .
  Rat   110 GILAQSLGGPGAPSSPGVQRRTPYEWM---------------RRNVAAAGG-------------G 146

  Fly   282 GSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 346
            ||      |....:.:.|..||.:|.||||||||.:.|:|.||:.|:|..|.|||||:|||||||
  Rat   147 GS------GKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNR 205

  Fly   347 RMKLKKEIQAIKELNEQEKQAQAQK 371
            |.|.:|    :.:..:|::|.|.|:
  Rat   206 RAKERK----VNKKKQQQQQQQQQQ 226

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	33/55 (60%)
Cdx1	NP_001406562.1	Caudal_act	13..140	CDD:461413	10/44 (23%)
		Homeodomain	156..211	CDD:459649	33/54 (61%)