Protein Alignment Ubx and Gsx2

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001131035.2
• Gene: Gsx2 / 364140
• RGDID: 1308047
• Length: 305
• Species: Rattus norvegicus
• Alignment Length: 288
• Identity: 88/288 - (30%)
• Similarity: 115/288 - (39%)
• Gaps: 94/288 - (32%)

  Fly   119 GGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSH----- 178
            |.||||.||.||..|.||.|..       .|.:|:..|..:|     |..|......|||
  Rat    77 GAGGGATGTAGAAVAGGGVAGG-------TGALPLLKSQFSP-----GPGDAQFCPRVSHAHHHH 129

  Fly   179 -------------RGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASS 230
                         :.|||                      |.|..|         |||..|||::
  Rat   130 HAPQHHHHHHQPQQPGSA----------------------AAAAAA---------AAAAAAAAAA 163

  Fly   231 LHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLR 295
            |....:|.  |..|.......||.    |......||..|            |.:|     ||
  Rat   164 LGHPQHHA--PVCAATTYNVSDPR----RFHCLTMGGSDT------------SQVP-----NG-- 203

  Fly   296 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ----- 355
            :|.|..:|..|.||||:||.:|.||:|.||||:|..|.|:|:|:||||||||:|.|||.:
  Rat   204 KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGASRN 268

  Fly   356 ---AIKELNEQEKQAQAQKAAAAAAAAA 380
               :.|.:..|...|:::...:.:.|:|
  Rat   269 NHASCKCVGSQAHYARSEDEDSLSPASA 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	32/55 (58%)
Gsx2	NP_001131035.2	Homeodomain	204..260	CDD:459649	32/55 (58%)