DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and Hlx

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_001071142.1 Gene:Hlx / 364069 RGDID:1311961 Length:476 Species:Rattus norvegicus


Alignment Length:398 Identity:89/398 - (22%)
Similarity:135/398 - (33%) Gaps:134/398 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SPYDASITAACNKIY----GDGAGAYKQDCLNIK------ADAVNGYKDIWNTGGSNGGGGGGGG 118
            :|:.||..:..:..|    |.|..::..|...:|      ||.::             .|.|..|
  Rat     7 APFYASNFSLWSAAYCSSAGPGGCSFALDPAAVKKPSFCIADILH-------------AGVGEPG 58

  Fly   119 GGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRV------------------- 164
            ....|..|...|..|:.| :.:.:.....|...|:||:.....|.|                   
  Rat    59 PAAEGLVGASAALTAHLG-SVHPHASFQAAARSPLRPTPVVAPSEVPAGFPQRLSPLSAAYHQHL 122

  Fly   165 --------------------GGYLD--TSGGSPVSHRGGSAGGNVS------------------V 189
                                .|.|.  |||...|.|..|||....|                  |
  Rat   123 PQQPPTQQQQPQQQPPPPPRAGSLQPPTSGTRVVPHHSGSAPAPSSKDLKFGIDRILSAEFDPKV 187

  Fly   190 SGGNG-------NAGGVQSGVGVAGAGTAWNANCTISGAAAQ-TAAASSLHQASNHTFYPWMAIA 246
            ..||.       ..||..:||.:||          :..:|.| .|:...:.:||        ||.
  Rat   188 KEGNTLRDLTSLLTGGRPTGVHLAG----------LQPSAGQFFASLDPISEAS--------AIL 234

  Fly   247 GECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGS---LLPDWLGTNGLRRR--GRQTYTRYQ 306
            .....:|..|               :..::.::..|.   |..|.:.....|:|  .|..::..|
  Rat   235 SPLSSNPRNS---------------VQHQFQDTFPGPYAVLTKDTMPQTYKRKRSWSRAVFSNLQ 284

  Fly   307 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK--KEIQAIKELNEQEKQAQA 369
            ...|||.|....|:|:..|.::|..|.||:.|:|:||||||||.:  ||.||.|   :::|:|..
  Rat   285 RKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQK---DKDKEAGE 346

  Fly   370 QKAAAAAA 377
            :.:....|
  Rat   347 KPSGGVPA 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 24/59 (41%)
HlxNP_001071142.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..170 11/48 (23%)
Homeodomain 270..330 CDD:459649 25/59 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..401 8/30 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..476
Blue background indicates that the domain is not in the aligned region.

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