DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and tup

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster


Alignment Length:221 Identity:45/221 - (20%)
Similarity:77/221 - (34%) Gaps:83/221 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 CTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAA 222
            |..|..|   |:.|..|.::  ..|...|.::|..|.|...:.:           |.:.:..|:.
  Fly   167 CKEDHDV---LEKSSQSSLT--SSSVESNNNISSSNNNNTNLSN-----------NNHSSELGSM 215

  Fly   223 AQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPD 287
            :.:.:.|..|:          :|..:.|..|:..|                            | 
  Fly   216 SDSGSESGSHK----------SIRDKRPSGPSDGK----------------------------P- 241

  Fly   288 WLGTNGLRRRGRQTYTRYQTLELEKEFHT----------NHYLTRRRRIEMAHALCLTERQIKIW 342
                           ||.:|:..||:.||          ...|.:.:.:||.   .|:.|.|::|
  Fly   242 ---------------TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMT---SLSPRVIRVW 288

  Fly   343 FQNRRMKLKKEIQAIKELNEQEKQAQ 368
            |||:|.|.||:...:|...:|||:.:
  Fly   289 FQNKRCKDKKKTIQMKLQMQQEKEGR 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 19/65 (29%)
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760 1/3 (33%)
HOX 241..297 CDD:197696 20/74 (27%)
Blue background indicates that the domain is not in the aligned region.

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