Protein Alignment Ubx and prd

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_723721.1
• Gene: prd / 34629
• FlyBaseID: FBgn0003145
• Length: 613
• Species: Drosophila melanogaster
• Alignment Length: 276
• Identity: 61/276 - (22%)
• Similarity: 94/276 - (34%)
• Gaps: 99/276 - (35%)

  Fly   137 NAANANGQNNPA--GGMPVRPSACTP--DSRVGGYLDTSGG------------------------ 173
            |.....|...|.  ||.  :|...||  ::|:..|..:|.|
  Fly    81 NRYQETGSIRPGVIGGS--KPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV 143

  Fly   174 SPVSH--RGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASN 236
            |.:|.  ||..|..:..:|..:|:.         ||.||..:::|           .|.:....:
  Fly   144 SAISRLVRGRDAPLDNDMSSASGSP---------AGDGTKASSSC-----------GSDVSGGHH 188

  Fly   237 HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQT 301
            :...|......:|..:|             ||:.   ||                  .:||.|.|
  Fly   189 NNGKPSDEDISDCESEP-------------GIAL---KR------------------KQRRCRTT 219

  Fly   302 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQ 366
            ::..|..|||:.|....|.....|.|:|....|||.:|::||.|||.:|:|:..::
  Fly   220 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSV--------- 275

  Fly   367 AQAQKAAAAAAAAAAV 382
                ...|...|||:|
  Fly   276 ----SGGAPGGAAASV 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	23/55 (42%)
prd	NP_723721.1	PAX	27..154	CDD:238076	16/74 (22%)
		Homeodomain	214..270	CDD:459649	23/55 (42%)