Protein Alignment Ubx and scro

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 243
• Identity: 57/243 - (23%)
• Similarity: 95/243 - (39%)
• Gaps: 57/243 - (23%)

  Fly   168 LDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLH 232
            |:.:|..|...|..|:..:::..|                       ..|.|..|...|..:..|
  Fly   132 LELNGNPPSPFRSNSSSSSINSPG-----------------------TLTTSTMANPYAMGTLYH 173

  Fly   233 QASNHTFY-PW--MAIAGECPEDPTKSKIRSDLTQYGGISTD----MGKRYSESLAGSLLPDWLG 290
            .....|:. |.  :::||...:      :|:..:.||..:.|    :.:..|.|.:|::  ..:|
  Fly   174 SPGVQTYCGPTDNLSLAGHYTD------MRNSASWYGSTANDPRFAISRLMSSSASGTM--SHMG 230

  Fly   291 T-NGL-----------------RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTER 337
            . :||                 ||:.|..:|:.|..|||:.|....||:...|..:|..:.||..
  Fly   231 NMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPT 295

  Fly   338 QIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGG 385
            |:||||||.|.|.|::.:. |.:.||.:..|...:....|....|:.|
  Fly   296 QVKIWFQNHRYKCKRQAKE-KAMAEQNQHNQPASSPRRVAVPVLVKDG 342

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	23/55 (42%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	23/55 (42%)