Protein Alignment Ubx and Vsx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Alignment Length: 394
• Identity: 110/394 - (27%)
• Similarity: 146/394 - (37%)
• Gaps: 111/394 - (28%)

  Fly     9 SGFYGHPHQATGMAMGSGG---HHDQTASAAAAAYRGFPLSLGMS---PYANHHLQRTTQDSPYD 67
            :.||.....|.....|:..   ||..|..||||..||| |..|.|   .:..|..|.      :.
  Fly   120 ANFYAAAGYAAAADPGNAAAAHHHHMTTLAAAAYLRGF-LPPGFSTPHEFRGHFQQH------FG 177

  Fly    68 ASITAACNKIYGDGAGA----YKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAGGTG 128
            |.        :.:.|.|    |.....|...|..:..|:..::|  |||.||.|.|.|||...:.
  Fly   178 AQ--------FAEQAAARGQEYASSLANASGDEQSPSKNSSSSG--NGGSGGSGSGSGGGNPTSN 232

  Fly   129 GAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGN 193
            |.|:.....|:| .|....||              |||   :.|||      |::|.|.|.||..
  Fly   233 GLGHLGSPTASN-GGSGGGAG--------------VGG---SGGGS------GTSGSNSSTSGNG 273

  Fly   194 GNAGGVQSGVGVAG----AGTAWNANCTISGAAA--QTAAASSLHQASN---------------- 236
            ||.|...|....||    |..|.:.:...:.|||  ..|||::.|.|.:
  Fly   274 GNGGSSGSRSSPAGPHHSAALAAHQHAAAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAH 338

  Fly   237 ------------HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWL 289
                        |....::..||....:|     .|.|..:||          :.|.|   |...
  Fly   339 AAHAAHAAHAHAHHAEAFLGAAGGAGGNP-----NSLLAAHGG----------DVLVG---PGGT 385

  Fly   290 GTNG----LRRRGRQTYTRYQTLELEKEFHTNHY--LTRRRRIEMAHALCLTERQIKIWFQNRRM 348
            |..|    .||.||..:|..|..||||.|...||  ::.|..:.|...  |.|.:|::|:||||.
  Fly   386 GPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTG--LAEDRIQVWYQNRRA 448

  Fly   349 KLKK 352
            |.:|
  Fly   449 KWRK 452

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	23/57 (40%)
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	24/58 (41%)