Protein Alignment Ubx and pdx1

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_571518.2
• Gene: pdx1 / 30721
• ZFINID: ZDB-GENE-990415-122
• Length: 246
• Species: Danio rerio
• Alignment Length: 135
• Identity: 51/135 - (37%)
• Similarity: 64/135 - (47%)
• Gaps: 41/135 - (30%)

  Fly   237 HTFYPWMAIAGECPEDPTKSKIRSDLTQYGG---ISTDMGKRYSESLAGSLLPDWLGTNGLRRRG 298
            |..:|||        ..|||...:...|:.|   :..:..|                      |.
Zfish   106 HLPFPWM--------KSTKSHTHAWKGQWTGPYMVEAEENK----------------------RT 140

  Fly   299 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQ 363
            |..|||.|.|||||||..|.|::|.||:|:|..|.||||.|||||||||||.|||        |.
Zfish   141 RTAYTRAQLLELEKEFLFNKYISRPRRVELALTLSLTERHIKIWFQNRRMKWKKE--------ED 197

  Fly   364 EKQAQ 368
            :::|:
Zfish   198 KRRAR 202

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	36/55 (65%)
pdx1	NP_571518.2	Homeodomain	138..194	CDD:459649	37/77 (48%)