Protein Alignment Ubx and emx3

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_571354.1
• Gene: emx3 / 30536
• ZFINID: ZDB-GENE-990415-53
• Length: 233
• Species: Danio rerio
• Alignment Length: 271
• Identity: 62/271 - (22%)
• Similarity: 98/271 - (36%)
• Gaps: 87/271 - (32%)

  Fly   142 NGQNNPAGGMPVRPSA-----CTPDSRVGGYLDTSGGS------------PVSHRGGSAGGNVSV 189
            :..:|.|...|:||:|     ....|..|.....||.:            |.:|
Zfish    19 SNSSNAAADEPIRPTALRFTESIHPSPFGSCFQNSGRTLYSSSPEMMFTDPSTH----------- 72

  Fly   190 SGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPT 254
                                 :.|:..::......|....|.||.....||||:
Zfish    73 ---------------------STNSGLSLRHLQIPTQPFFSPHQRDTLNFYPWV----------- 105

  Fly   255 KSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNG----LRRRGRQTYTRYQTLELEKEFH 315
               :|:   :|      :|.|:.   .....|:.|..:|    ..:|.|..::..|.|.||:.|.
Zfish   106 ---LRN---RY------LGHRFQ---GDDSSPENLLLHGPFSRKPKRIRTAFSPSQLLRLERAFE 155

  Fly   316 TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAA-- 378
            .|||:....|.::|:.|||||.|:|:||||||.|.|::     :|.|:....|.::..:...:
Zfish   156 KNHYVVGAERKQLANGLCLTETQVKVWFQNRRTKHKRQ-----KLEEESPDPQQKRKGSQHVSRW 215

  Fly   379 -AAAVQGGHLD 388
             .|..||...|
Zfish   216 RVATQQGSPED 226

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	26/55 (47%)
emx3	NP_571354.1	Homeodomain	136..192	CDD:459649	26/55 (47%)