Protein Alignment Ubx and msx2b

DIOPT Version :10

• Sequence 1: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Sequence 2: NP_571351.3
• Gene: msx2b / 30531
• ZFINID: ZDB-GENE-980526-492
• Length: 241
• Species: Danio rerio
• Alignment Length: 147
• Identity: 49/147 - (33%)
• Similarity: 66/147 - (44%)
• Gaps: 20/147 - (13%)

  Fly   218 ISGAAAQTAAASSLHQAS--NHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESL 280
            :|...|||....|...|.  .|.......:..|.||.       .|.|     |..|..|||::.
Zfish    50 VSSQFAQTEIRDSCGSAGIPKHFMLQTSPVKSESPEP-------DDCT-----SWVMNSRYSQTR 102

  Fly   281 AGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 345
            ..|..|  |..:...|:.|..:|..|.|.||::|....||:...|.|.:.:|.|||.|:||||||
Zfish   103 QESPCP--LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQN 165

  Fly   346 RRMKLKK----EIQAIK 358
            ||.|.|:    |::.:|
Zfish   166 RRAKAKRLQEAELEKLK 182

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	26/55 (47%)
msx2b	NP_571351.3	Homeodomain	116..172	CDD:459649	26/55 (47%)