DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and msx1a

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_571348.1 Gene:msx1a / 30527 ZFINID:ZDB-GENE-980526-312 Length:233 Species:Danio rerio


Alignment Length:112 Identity:40/112 - (35%)
Similarity:55/112 - (49%) Gaps:8/112 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 RYSES-LAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQ 338
            |:|.| |:....|  |..:...|:.|..::..|.|.||::|....||:...|.|.:.:|.|||.|
Zfish    92 RFSPSRLSPPACP--LRKHKTNRKPRTPFSTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 154

  Fly   339 IKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGG 385
            :||||||||.|.|:..:|     |.||...|.|.....|...:...|
Zfish   155 VKIWFQNRRAKAKRLQEA-----ELEKLKMAAKPLLPPAFGISFPAG 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 25/55 (45%)
msx1aNP_571348.1 Homeodomain 112..168 CDD:459649 25/55 (45%)

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