DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubx and msx1b

DIOPT Version :10

Sequence 1:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster
Sequence 2:NP_571335.1 Gene:msx1b / 30511 ZFINID:ZDB-GENE-980526-26 Length:257 Species:Danio rerio


Alignment Length:182 Identity:49/182 - (26%)
Similarity:70/182 - (38%) Gaps:48/182 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 QTAAASSL-HQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAG----- 282
            |.|.:.:| ||...|                .:..:|:...:...:|.|.....|:||..     
Zfish    57 QVACSPALQHQRMGH----------------GQDLVRTYFVEKAKVSVDTLSSVSDSLNDDSEEL 105

  Fly   283 ---------------------SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRI 326
                                 |..|..|..:...|:.|..::..|.|.||::|....||:...|.
Zfish   106 SDKEQSTWSNSSSFTSPPRHPSPTPCTLRKHKTNRKPRTPFSTSQLLSLERKFRQKQYLSIAERA 170

  Fly   327 EMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAA 378
            |.:::|.|||.|:||||||||.|.|:..:|     |.||...|.|...|..|
Zfish   171 EFSNSLNLTETQVKIWFQNRRAKAKRLQEA-----ELEKFKCASKPLLAPFA 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 25/55 (45%)
msx1bNP_571335.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..146 8/54 (15%)
Homeodomain 140..196 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

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